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custom
Cantore_LiverDynamics2023
Cantore_LiverDynamics2023_snRNAseq_RNAseq_vizgen
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fe86289c
Commit
fe86289c
authored
Jul 08, 2025
by
Marco Monti
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I updated the README file
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README.md
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@@ -28,8 +28,10 @@ Entire GitLab repository: <http://www.bioinfotiget.it/gitlab/custom/cantore_live
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paper_plots_snRNAseq.R: script to generate all the figures containing snRNAseq data;
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paper_plots_RNAseq.R: script to generate all the figures containing RNAseq data;
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paper_plots_vizgen.R: script to generate all the figures containing Vizgen-MERFISH data;
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paper_plots_visium.R: script to generate all the figures containing Visium data;
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useful_functions.R: contains functions for UMAP, featureplots, Violin plots;
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volcano_function.R: contains the function for the volcano plot for RNAseq data;
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ggplot_new_scale.R: contains functions used in the paper_plots_visium.R script;
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data: results of the analyses
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plots: all the plots generated by these scripts
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tables
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data/tables/full_UMAP_and_metadata.csv
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data/tables/hepatocytes_UMAP_and_metadata.csv
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