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Commit 9bc178b7 authored by Teresa Tavella's avatar Teresa Tavella
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motif

parent 332879cf
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homer_batch.sbatch 0 → 100644
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#!/bin/bash
bed='/beegfs/scratch/ric.dimicco/ric.dimicco/DiMiccoR_EL_90-1049491329_ATACseq/results/05-filter_qual_bos_qual25/multibamc'
homerfolder='/beegfs/scratch/ric.dimicco/ric.dimicco/DiMiccoR_EL_90-1049491329_ATACseq/results/05-filter_qual_bos_qual25/multibamc'
cd $homerfolder
batchFindMotifsGenome.pl hg38 -size 200 -mask -f Open_DARs.sorted.bed Close_DARs.sorted.bed
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