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Commit 6a3d172f authored by Ivan Merelli's avatar Ivan Merelli
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Added synthetic data generator

parent 13ac2ab8
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Inline Side-by-side
sc_gen/cell_metadata.csv 0 → 100644
View file @ 6a3d172f
Cell,CellType,Genotype,TrueCellType,TrueGenotype
Cell_0,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_1,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_2,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_3,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_4,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_5,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_6,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_7,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_8,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_9,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_10,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_11,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_12,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_13,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_14,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_15,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_16,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_17,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_18,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_19,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_20,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_21,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_22,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_23,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_24,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_25,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_26,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_27,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_28,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_29,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_30,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_31,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_32,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_33,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_34,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_35,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_36,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_37,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_38,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_39,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_40,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_41,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_42,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_43,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_44,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_45,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_46,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_47,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_48,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_49,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_50,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_51,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_52,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_53,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_54,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_55,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_56,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_57,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_58,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_59,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_60,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_61,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_62,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_63,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_64,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_65,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_66,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_67,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_68,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_69,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_70,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_71,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_72,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_73,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_74,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_75,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_76,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_77,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_78,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_79,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_80,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_81,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_82,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_83,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_84,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_85,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_86,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_87,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_88,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_89,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_90,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_91,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_92,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_93,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_94,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_95,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_96,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_97,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_98,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_99,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_100,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_101,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_102,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_103,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_104,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_105,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_106,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_107,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_108,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_109,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_110,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_111,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_112,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_113,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_114,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_115,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_116,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_117,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_118,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_119,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_120,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_121,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_122,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_123,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_124,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_125,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_126,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_127,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_128,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_129,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_130,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_131,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_132,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_133,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_134,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_135,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_136,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_137,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_138,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_139,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_140,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_141,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_142,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_143,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_144,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_145,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_146,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_147,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_148,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_149,CellType_3,Genotype_1,CellType_3,Genotype_1
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Cell_151,CellType_0,Genotype_0,CellType_0,Genotype_0
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Cell_153,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_154,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_155,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_156,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_157,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_158,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_159,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_160,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_161,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_162,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_163,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_164,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_165,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_166,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_167,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_168,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_169,CellType_3,Genotype_0,CellType_3,Genotype_0
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Cell_171,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_172,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_173,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_174,CellType_3,Genotype_3,CellType_3,Genotype_3
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Cell_178,CellType_4,Genotype_0,CellType_4,Genotype_0
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Cell_206,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_207,CellType_2,Genotype_0,CellType_2,Genotype_0
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Cell_215,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_216,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_217,CellType_3,Genotype_2,CellType_3,Genotype_2
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Cell_321,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_322,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_323,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_324,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_325,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_326,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_327,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_328,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_329,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_330,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_331,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_332,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_333,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_334,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_335,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_336,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_337,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_338,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_339,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_340,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_341,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_342,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_343,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_344,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_345,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_346,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_347,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_348,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_349,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_350,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_351,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_352,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_353,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_354,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_355,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_356,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_357,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_358,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_359,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_360,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_361,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_362,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_363,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_364,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_365,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_366,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_367,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_368,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_369,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_370,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_371,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_372,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_373,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_374,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_375,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_376,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_377,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_378,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_379,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_380,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_381,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_382,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_383,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_384,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_385,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_386,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_387,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_388,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_389,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_390,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_391,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_392,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_393,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_394,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_395,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_396,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_397,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_398,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_399,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_400,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_401,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_402,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_403,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_404,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_405,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_406,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_407,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_408,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_409,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_410,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_411,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_412,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_413,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_414,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_415,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_416,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_417,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_418,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_419,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_420,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_421,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_422,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_423,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_424,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_425,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_426,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_427,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_428,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_429,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_430,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_431,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_432,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_433,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_434,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_435,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_436,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_437,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_438,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_439,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_440,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_441,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_442,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_443,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_444,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_445,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_446,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_447,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_448,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_449,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_450,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_451,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_452,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_453,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_454,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_455,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_456,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_457,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_458,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_459,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_460,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_461,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_462,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_463,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_464,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_465,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_466,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_467,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_468,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_469,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_470,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_471,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_472,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_473,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_474,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_475,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_476,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_477,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_478,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_479,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_480,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_481,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_482,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_483,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_484,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_485,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_486,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_487,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_488,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_489,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_490,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_491,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_492,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_493,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_494,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_495,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_496,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_497,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_498,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_499,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_500,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_501,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_502,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_503,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_504,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_505,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_506,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_507,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_508,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_509,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_510,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_511,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_512,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_513,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_514,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_515,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_516,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_517,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_518,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_519,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_520,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_521,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_522,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_523,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_524,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_525,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_526,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_527,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_528,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_529,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_530,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_531,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_532,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_533,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_534,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_535,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_536,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_537,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_538,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_539,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_540,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_541,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_542,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_543,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_544,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_545,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_546,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_547,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_548,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_549,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_550,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_551,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_552,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_553,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_554,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_555,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_556,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_557,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_558,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_559,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_560,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_561,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_562,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_563,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_564,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_565,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_566,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_567,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_568,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_569,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_570,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_571,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_572,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_573,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_574,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_575,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_576,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_577,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_578,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_579,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_580,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_581,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_582,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_583,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_584,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_585,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_586,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_587,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_588,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_589,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_590,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_591,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_592,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_593,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_594,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_595,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_596,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_597,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_598,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_599,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_600,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_601,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_602,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_603,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_604,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_605,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_606,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_607,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_608,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_609,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_610,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_611,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_612,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_613,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_614,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_615,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_616,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_617,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_618,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_619,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_620,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_621,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_622,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_623,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_624,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_625,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_626,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_627,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_628,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_629,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_630,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_631,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_632,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_633,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_634,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_635,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_636,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_637,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_638,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_639,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_640,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_641,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_642,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_643,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_644,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_645,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_646,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_647,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_648,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_649,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_650,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_651,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_652,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_653,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_654,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_655,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_656,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_657,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_658,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_659,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_660,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_661,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_662,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_663,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_664,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_665,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_666,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_667,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_668,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_669,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_670,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_671,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_672,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_673,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_674,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_675,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_676,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_677,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_678,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_679,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_680,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_681,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_682,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_683,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_684,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_685,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_686,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_687,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_688,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_689,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_690,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_691,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_692,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_693,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_694,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_695,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_696,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_697,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_698,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_699,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_700,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_701,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_702,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_703,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_704,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_705,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_706,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_707,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_708,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_709,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_710,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_711,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_712,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_713,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_714,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_715,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_716,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_717,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_718,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_719,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_720,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_721,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_722,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_723,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_724,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_725,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_726,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_727,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_728,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_729,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_730,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_731,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_732,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_733,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_734,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_735,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_736,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_737,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_738,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_739,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_740,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_741,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_742,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_743,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_744,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_745,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_746,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_747,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_748,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_749,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_750,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_751,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_752,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_753,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_754,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_755,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_756,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_757,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_758,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_759,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_760,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_761,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_762,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_763,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_764,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_765,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_766,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_767,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_768,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_769,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_770,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_771,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_772,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_773,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_774,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_775,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_776,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_777,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_778,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_779,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_780,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_781,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_782,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_783,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_784,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_785,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_786,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_787,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_788,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_789,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_790,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_791,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_792,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_793,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_794,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_795,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_796,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_797,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_798,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_799,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_800,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_801,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_802,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_803,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_804,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_805,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_806,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_807,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_808,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_809,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_810,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_811,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_812,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_813,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_814,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_815,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_816,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_817,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_818,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_819,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_820,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_821,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_822,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_823,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_824,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_825,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_826,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_827,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_828,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_829,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_830,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_831,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_832,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_833,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_834,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_835,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_836,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_837,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_838,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_839,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_840,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_841,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_842,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_843,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_844,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_845,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_846,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_847,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_848,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_849,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_850,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_851,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_852,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_853,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_854,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_855,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_856,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_857,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_858,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_859,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_860,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_861,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_862,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_863,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_864,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_865,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_866,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_867,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_868,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_869,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_870,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_871,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_872,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_873,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_874,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_875,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_876,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_877,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_878,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_879,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_880,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_881,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_882,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_883,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_884,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_885,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_886,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_887,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_888,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_889,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_890,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_891,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_892,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_893,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_894,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_895,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_896,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_897,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_898,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_899,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_900,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_901,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_902,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_903,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_904,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_905,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_906,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_907,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_908,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_909,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_910,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_911,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_912,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_913,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_914,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_915,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_916,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_917,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_918,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_919,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_920,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_921,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_922,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_923,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_924,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_925,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_926,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_927,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_928,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_929,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_930,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_931,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_932,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_933,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_934,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_935,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_936,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_937,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_938,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_939,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_940,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_941,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_942,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_943,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_944,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_945,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_946,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_947,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_948,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_949,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_950,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_951,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_952,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_953,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_954,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_955,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_956,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_957,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_958,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_959,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_960,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_961,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_962,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_963,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_964,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_965,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_966,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_967,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_968,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_969,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_970,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_971,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_972,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_973,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_974,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_975,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_976,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_977,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_978,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_979,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_980,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_981,CellType_3,Genotype_1,CellType_3,Genotype_1
Cell_982,CellType_3,Genotype_2,CellType_3,Genotype_2
Cell_983,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_984,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_985,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_986,CellType_4,Genotype_2,CellType_4,Genotype_2
Cell_987,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_988,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_989,CellType_1,Genotype_2,CellType_1,Genotype_2
Cell_990,CellType_1,Genotype_1,CellType_1,Genotype_1
Cell_991,CellType_2,Genotype_0,CellType_2,Genotype_0
Cell_992,CellType_3,Genotype_3,CellType_3,Genotype_3
Cell_993,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_994,CellType_4,Genotype_0,CellType_4,Genotype_0
Cell_995,CellType_1,Genotype_0,CellType_1,Genotype_0
Cell_996,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_997,CellType_0,Genotype_0,CellType_0,Genotype_0
Cell_998,CellType_3,Genotype_0,CellType_3,Genotype_0
Cell_999,CellType_2,Genotype_0,CellType_2,Genotype_0
sc_gen/gene_expression.csv 0 → 100644
View file @ 6a3d172f
This source diff could not be displayed because it is too large. You can view the blob instead.
sc_gen/generate_synthetic_singlecell.py 0 → 100644
View file @ 6a3d172f
import argparse
import numpy as np
import pandas as pd
import random
def generate_data(N, F, V, T, G,
expr_sparsity, var_sparsity,
expr_error, var_error, label_noise,
expr_out, var_out, truth_out, cell_metadata_out):
np.random.seed(42)
random.seed(42)
# Define labels
cell_types = [f"CellType_{i}" for i in range(T)]
genotypes = [f"Genotype_{i}" for i in range(G)]
cells = [f"Cell_{i}" for i in range(N)]
# Assign true labels
true_cell_types = np.random.choice(cell_types, size=N)
celltype_to_genotypes = {
ct: sorted(random.sample(genotypes, random.randint(1, G))) for ct in cell_types
}
true_genotypes = [
random.choice(celltype_to_genotypes[ct]) for ct in true_cell_types
]
# Corrupt labels if needed
noisy_cell_types = true_cell_types.copy()
noisy_genotypes = true_genotypes.copy()
n_noisy = int(label_noise * N)
noisy_indices = np.random.choice(N, n_noisy, replace=False)
for i in noisy_indices:
wrong_ct = list(set(cell_types) - {true_cell_types[i]})
noisy_cell_types[i] = random.choice(wrong_ct)
wrong_genos = list(set(genotypes) - set(celltype_to_genotypes[true_cell_types[i]]))
if wrong_genos:
noisy_genotypes[i] = random.choice(wrong_genos)
# ---------------------------------------------
# Generate reference transcriptome per CellType
# ---------------------------------------------
expr_reference = {
ct: np.random.lognormal(mean=1.0, sigma=0.5, size=F)
for ct in cell_types
}
# Per-gene noise variance for each cell type (gene-specific)
gene_noise_factors = np.random.uniform(0.5, 1.5, size=F)
# Generate expression matrix with noise per cell
expr_data = np.zeros((F, N)) # genes x cells
for i in range(N):
ct = noisy_cell_types[i]
profile = expr_reference[ct]
noise_std = expr_error * gene_noise_factors
expr_data[:, i] = np.random.normal(loc=profile, scale=noise_std)
# Apply sparsity (dropouts): zero out expr_sparsity% of genes in each cell
for i in range(N):
zero_indices = np.random.choice(F, size=int(expr_sparsity * F), replace=False)
expr_data[zero_indices, i] = 0.0
expr_data[np.abs(expr_data) < 1e-10] = 0.0 # clean -0
expr_df = pd.DataFrame(expr_data, index=[f"Gene_{i}" for i in range(F)], columns=cells)
expr_df.to_csv(expr_out)
# ------------------------------------------
# Generate reference genotype profiles
# ------------------------------------------
variant_reference = {
g: np.random.binomial(1, 0.1, size=V)
for g in genotypes
}
# Generate variant matrix for each cell from its genotype
var_data = np.zeros((V, N), dtype=int)
for i in range(N):
g = noisy_genotypes[i]
profile = variant_reference[g].copy()
# Introduce random changes: replace var_error * V entries with 0 or 1
n_changes = int(var_error * V)
indices_to_modify = np.random.choice(V, size=n_changes, replace=False)
profile[indices_to_modify] = np.random.randint(0, 2, size=n_changes)
# Apply sparsity (dropouts): zero out var_sparsity% of variants
n_zeros = int(var_sparsity * V)
zero_indices = np.random.choice(V, size=n_zeros, replace=False)
profile[zero_indices] = 0
var_data[:, i] = profile
var_df = pd.DataFrame(var_data, index=[f"Variant_{i}" for i in range(V)], columns=cells)
var_df.to_csv(var_out)
# ------------------------------------------
# Save CellType <-> Genotype mapping (truth)
# ------------------------------------------
ct_gt = pd.DataFrame(
[(ct, g) for ct, gs in celltype_to_genotypes.items() for g in gs],
columns=["CellType", "Genotype"]
)
ct_gt.to_csv(truth_out, index=False)
# ------------------------------------------
# Save per-cell metadata
# ------------------------------------------
metadata_df = pd.DataFrame({
"Cell": cells,
"CellType": noisy_cell_types,
"Genotype": noisy_genotypes,
"TrueCellType": true_cell_types,
"TrueGenotype": true_genotypes
})
metadata_df.to_csv(cell_metadata_out, index=False)
print(f"✔ Expression matrix saved to: {expr_out}")
print(f"✔ Variant matrix saved to: {var_out}")
print(f"✔ CellType–Genotype mapping saved to: {truth_out}")
print(f"✔ Cell metadata (true + noisy labels) saved to: {cell_metadata_out}")
if __name__ == "__main__":
parser = argparse.ArgumentParser(description="Generate synthetic single-cell data with realistic transcriptome and variant noise.")
parser.add_argument("--cells", type=int, required=True)
parser.add_argument("--genes", type=int, required=True)
parser.add_argument("--variants", type=int, required=True)
parser.add_argument("--celltypes", type=int, required=True)
parser.add_argument("--genotypes", type=int, required=True)
parser.add_argument("--expr_out", type=str, required=True)
parser.add_argument("--var_out", type=str, required=True)
parser.add_argument("--truth_out", type=str, required=True)
parser.add_argument("--cell_metadata_out", type=str, required=True)
# Sparsity = dropout-like effect
parser.add_argument("--expr_sparsity", type=float, default=0.3,
help="Fraction of genes set to 0 in each cell (simulates dropout)")
parser.add_argument("--var_sparsity", type=float, default=0.1,
help="Fraction of variants set to 0 in each cell (simulates missed calls)")
# Noise = deviation from reference profile
parser.add_argument("--expr_error", type=float, default=0.3,
help="Amount of expression noise per gene per cell")
parser.add_argument("--var_error", type=float, default=0.3,
help="Fraction of variants changed arbitrarily per cell")
# Label noise = wrong labels
parser.add_argument("--label_noise", type=float, default=0.0,
help="Fraction of cells with incorrect celltype/genotype labels")
args = parser.parse_args()
generate_data(
N=args.cells,
F=args.genes,
V=args.variants,
T=args.celltypes,
G=args.genotypes,
expr_sparsity=args.expr_sparsity,
var_sparsity=args.var_sparsity,
expr_error=args.expr_error,
var_error=args.var_error,
label_noise=args.label_noise,
expr_out=args.expr_out,
var_out=args.var_out,
truth_out=args.truth_out,
cell_metadata_out=args.cell_metadata_out,
)
sc_gen/ground_truth.csv 0 → 100644
View file @ 6a3d172f
CellType,Genotype
CellType_0,Genotype_0
CellType_1,Genotype_0
CellType_1,Genotype_1
CellType_1,Genotype_2
CellType_2,Genotype_0
CellType_3,Genotype_0
CellType_3,Genotype_1
CellType_3,Genotype_2
CellType_3,Genotype_3
CellType_4,Genotype_0
CellType_4,Genotype_2
sc_gen/variant_matrix.csv 0 → 100644
View file @ 6a3d172f
This source diff could not be displayed because it is too large. You can view the blob instead.
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