From 24e414c7ee2fa5eb9367b804b4574df7a57ff139 Mon Sep 17 00:00:00 2001
From: Teresa Tavella <tavella.terea@hsr.it>
Date: Mon, 14 Oct 2024 13:17:31 +0000
Subject: [PATCH] Update README.md

---
 README.md | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/README.md b/README.md
index 1b59803..b9d67cf 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,21 @@
 # DellaVolpe_scRNA-seq
 
+<details>
+<summary markdown="span"><strong>Cellranger (v 6.1.1)</strong></summary>
+ - cellranger count --localcores x  --id=${sample}_counts --libraries ${libcsv} --feature-ref ${featcsv} --transcriptome=${ref}
+</details>
+
+<details>
+<summary markdown="span"><strong>Cell and feature filtering and HTO demultiplexing</strong></summary>
+ - HTO_demux.R
+</details>
+
+<details>
+<summary markdown="span"><strong>Check for gender bias</strong></summary>
+ - Check_donor_bias.pdf
+</details>
+
+<details>
+<summary markdown="span"><strong>Paper Figures</strong></summary>
+ - scRNAseq_paper_figures.pdf
+</details>
-- 
GitLab