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 # DellaVolpe_scRNA-seq
 
+<details>
+<summary markdown="span"><strong>Cellranger (v 6.1.1)</strong></summary>
+ - cellranger count --localcores x  --id=${sample}_counts --libraries ${libcsv} --feature-ref ${featcsv} --transcriptome=${ref}
+</details>
+
+<details>
+<summary markdown="span"><strong>Cell and feature filtering and HTO demultiplexing</strong></summary>
+ - HTO_demux.R
+</details>
+
+<details>
+<summary markdown="span"><strong>Check for gender bias</strong></summary>
+ - Check_donor_bias.pdf
+</details>
+
+<details>
+<summary markdown="span"><strong>Paper Figures</strong></summary>
+ - scRNAseq_paper_figures.pdf
+</details>