#!/bin/bash


bed='/beegfs/scratch/ric.dimicco/ric.dimicco/DiMiccoR_EL_90-1049491329_ATACseq/results/05-filter_qual_bos_qual25/multibamc'
homerfolder='/beegfs/scratch/ric.dimicco/ric.dimicco/DiMiccoR_EL_90-1049491329_ATACseq/results/05-filter_qual_bos_qual25/multibamc'

cd $homerfolder

batchFindMotifsGenome.pl hg38 -size 200 -mask -f Open_DARs.sorted.bed Close_DARs.sorted.bed